produces a map of all QC'd tracks and latitude and longitude coverage plots to assess the QC run. The map shows each SSM-estimated track in its own hue, with its Argos locations in a light tint of that hue; Argos locations removed by the prefilter are semi-transparent points in the track's dark shade. The coverage plots use the same hues, one panel per deployment, with the SSM-estimated latitude or longitude drawn as a dark line over the Argos locations, and the time outside the QC'd track shaded.
diagnostics(
fit,
fit1,
what = "p",
cut,
data,
ssm,
meta,
lines = FALSE,
obs = FALSE,
mpath = NULL,
dpath = NULL,
QCmode = "nrt",
tag_mfr = "wc",
cid = NULL
)the final aniMotum fit object from QC process
ignored (kept for compatibility)
the SSM-estimated or rerouted locations to be used
logical; should predicted locations be dropped if keep = FALSE - ie. in a large data gap
the standardized WC Locations or SMRU diag file (prior to truncation by metadata CTD start and end dates)
ignored (kept for compatibility)
ignored (kept for compatibility)
ignored; the map always shows track lines (kept for compatibility)
ignored; the map always shows the Argos locations (kept for compatibility)
path to write map file
path to write all other diagnostic files
ignored (kept for compatibility)
ignored (kept for compatibility)
SMRU campaign id (from config file). Ignored if WC data is used.