restructures diag files, formats dates & lc's; keeps the deployments in the metadata and starts each track at its deployment start (metadata column deploy_start, set by smru_deployment_start()); converts to sf geometry - all in preparation for SSM-filtering. Tracks are not truncated at the first or last CTD profile or dive record.

smru_prep_loc(smru, meta, dropIDs = NULL, crs = NULL, QCmode = NULL)

Arguments

smru

list of SMRU tables

meta

metadata; its deploy_start column (if present) sets the start of each track

dropIDs

SMRU refs to be dropped (eg. tags were turned on but not deployed)

crs

a proj4string to re-project diag locations from longlat. Default is NULL which results in one of 4 possible projections applied automatically, based on the centroid of the tracks. See overview vignette for details.

QCmode

specify whether QC is near real-time (nrt) or delayed-mode (dm)